References

Beggs, M. L., Cave, M. D., Marlowe, C., Cloney, L., Duck, P., & Eisenach, K. D. (1996). Characterization of Mycobacterium tuberculosis complex direct repeat sequence for use in cycling probe reaction. J Clin Microbiol, 34, 2985-9. Birkenmeyer, L. G., & Mushahwar, I. K. (1991). DNA probe amplification methods. J Virol Methods, 35, 117-26.

Brow, M. A., Oldenburg, M. C., Lyamichev, V., Heisler, L. M., Lyamicheva, N., Hall, J. G., Eagan, N. J., Olive, D. M., Smith, L. M., Fors, L., & Dahlberg, J. E. (1996). Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage. J Clin Microbiol, 34, 3129-37.

Brown, D. R., Bryan, J. T., Cramer, H., & Fife, K. H. (1993). Analysis of human papillo-mavirus types in exophytic condylomata acuminata by hybrid capture and Southern blot techniques. J Clin Microbiol, 31, 2667-73. Carroll, K. C., Aldeen, W. E., Morrison, M., Anderson, R., Lee, D., & Mottice, S. (1998). Evaluation of the Abbott LCx ligase chain reaction assay for detection of Chlamydia trachomatis and Neisseria gonorrhoeae in urine and genital swab specimens from a sexually transmitted disease clinic population. J Clin Microbiol, 36, 1630-3.

Cecil, J. A., Howell, M. R., Tawes, J. J., Gaydos, J. C., McKee, Jr. K. T., Quinn, T. C., & Gaydos, C. A. (2001). Features of Chlamydia trachomatis and Neisseria gonorrhoeae infection in male Army recruits. J Infect Dis, 184, 1216-9.

Cloney, L., Marlowe, C., Wong, A., Chow, R., & Bryan, R. (1999). Rapid detection of mecA in methicillin resistant Staphylococcus aureus using cycling probe technology. Mol Cell Probes, 13, 191-7.

Compton, J. (1991). Nucleic acid sequence-based amplification. Nature, 350, 91-2.

Cooksey, R. C., Holloway, B. P., Oldenburg, M. C., Listenbee, S., & Miller, C. W. (2000). Evaluation of the invader assay, a linear signal amplification method, for identification of mutations associated with resistance to rifampin and isoniazid in Mycobacterium tuberculosis. Antimicrob Agents Chemother, 44, 1296-301.

Duck, P., Alvarado-Urbina, G., Burdick, B., & Collier, B. (1990). Probe amplifier system based on chimeric cycling oligonucleotides. Biotechniques, 9, 142-8.

Eisenstein, B. I. (1990). The polymerase chain reaction. A new method of using molecular genetics for medical diagnosis. N Engl J Med, 322, 178-83.

Fong, W. K., Modrusan, Z., McNevin, J. P., Marostenmaki, J., Zin, B., & Bekkaoui, F. (2000). Rapid solid-phase immunoassay for detection of methicillin-resistant Staphylococcus aureus using cycling probe technology. J Clin Microbiol, 38, 2525-9.

Gaydos, C. A., Quinn, T. C., Willis, D., Weissfeld, A., Hook, E. W., Martin, D. H., Ferrero, D. V., & Schachter, J. (2003). Performance of the APTIMA Combo 2 assay for detection of Chlamydia trachomatis and Neisseria gonorrhoeae in female urine and endocervical swab specimens. J Clin Microbiol, 41, 304-9.

Harden, S. V., Thomas, D. C., Benoit, N., Minhas, K., Westra, W. H., Califano, J. A., Koch, W., & Sidransky, D. (2004). Real-time gap ligase chain reaction: a rapid semiquantitative assay for detecting p53 mutation at low levels in surgical margins and lymph nodes from resected lung and head and neck tumors. Clin Cancer Res, 10, 237985.

Hayden, R. T. (2004). In vitro nucleic acid amplification techniques. In: Persing, D. H., Tenover, F. C., Versalovic, J., Tang, Y. W., Unger, E. R., Relman, D. A., & White, T. J., eds. Molecular Microbiology: Diagnostic Principles and Practice. American Society for Microbiology, Washington, DC, pp. 43-69.

Hellyer, T. J., Fletcher, T. W., Bates, J. H., Stead, W. W., Templeton, G. L., Cave, M. D., & Eisenach, K. D. (1996). Strand displacement amplification and the polymerase chain reaction for monitoring response to treatment in patients with pulmonary tuberculosis. J Infect Dis, 173, 934-41.

Ho, S. K., Chan, T. M., Cheng, I. K., & Lai, K. N. (1999). Comparison of the second-generation digene hybrid capture assay with the branched-DNA assay for measurement of hepatitis B virus DNA in serum. J Clin Microbiol, 37, 2461-5.

Hollingsworth, R. C., Sillekens, P., van Deursen, P., Neal, K. R., & Irving, W. L. (1996). Serum HCV RNA levels assessed by quantitative NASBA: stability of viral load over time, and lack of correlation with liver disease. J Hepatol., 25, 301-6.

Jungkind, D., & Kessler, H. H. (2002). Molecular methods for diagnosis of infectious diseases. In: Truant, A. L., ed. Manual of Commercial Methods in Clinical Microbiology. American Society for Microbiology, Washington, DC, pp. 306-23.

Kwoh, D. Y., Davis, G. R., Whitfield, K. M., Chappelle, H. L., DiMichele, L. J., & Gingeras, T. R. (1989). Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format. Proc Natl Acad Sci USA, 86, 1173-7.

La Rocco, M. T., Wanger, A., Ocera, H., & Macias, E. (1994). Evaluation of a commercial rRNA amplification assay for direct detection of Mycobacterium tuberculosis in processed sputum. Eur J Clin Microbiol Infect Dis, 13, 726-31.

Landry, M. L., Garner, R., & Ferguson, D. (2003). Comparison of the NucliSens Basic kit (Nucleic Acid Sequence-Based Amplification) and the Argene Biosoft Enterovirus Consensus Reverse Transcription-PCR assays for rapid detection of enterovirus RNA in clinical specimens. J Clin Microbiol, 41, 5006-10.

Lau, J. Y., Davis, G. L., Kniffen, J., Qian, K. P., Urdea, M. S., Chan, C. S., Mizokami, M., Neuwald, P. D., & Wilber, J. C. (1993). Significance of serum hepatitis C virus RNA levels in chronic hepatitis C. Lancet, 341, 1501-4.

Little, M. C., Andrews, J., Moore, R., Bustos, S., Jones, L., Embres, C., Durmowicz, G., Harris, J., Berger, D., Yanson, K., Rostkowski, C., Yursis, D., Price, J., Fort, T., Walters, A., Collis, M., Llorin, O., Wood, J., Failing, F., O'Keefe, C., Scrivens, B., Pope, B., Hansen, T., Marino, K., Williams, K., et al. (1999). Strand displacement amplification and homogeneous real-time detection incorporated in a second-generation DNA probe system, BDProbeTecET. Clin Chem, 45, 777-84.

Lyamichev, V., Mast, A. L., Hall, J. G., Prudent, J. R., Kaiser, M. W., Takova, T., Kwiatkowski, R. W., Sander, T. J., de Arruda, M., Arco, D. A., Neri, B. P., & Brow, M. A. (1999). Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes. Nat. Biotechnol, 17, 292-6.

Mazzulli, T., Drew, L. W., Yen-Lieberman, B., Jekic-McMullen, D., Kohn, D. J., Isada, C., Moussa, G., Chua, R., & Walmsley, S. (1999). Multicenter comparison of the digene hybrid capture CMV DNA assay (version 2.0), the pp65 antigenemia assay, and cell culture for detection of cytomegalovirus viremia. J Clin Microbiol, 37, 958-63.

Modrusan, Z., Marlowe, C., Wheeler, D., Pirseyedi, M., & Bryan, R. N. (2000). CPT-EIA assays for the detection of vancomycin resistant vanA and vanB genes in enterococci. Diagn Microbiol Infect Dis, 37, 45-50.

Mullis, K. B. (1990). The unusual origin of the polymerase chain reaction. Sci Am, 262, 56-61, 64-5.

Osiowy, C. (2002). Sensitive detection of HBsAg mutants by a gap ligase chain reaction assay. J Clin Microbiol, 40, 2566-71.

Revets, H., Marissens, D., de Wit, S., Lacor, P., Clumeck, N., Lauwers, S., & Zissis, G. (1996). Comparative evaluation of NASBA HIV-1 RNA QT, AMPLICOR-HIV monitor, and QUANTIPLEX HIV RNA assay, three methods for quantification of human immunodeficiency virus type 1 RNA in plasma. J Clin Microbiol, 34, 1058-64.

Rossetti, S., Englisch, S., Bresin, E., Pignatti, P. F., & Turco, A. E. (1997). Detection of mutations in human genes by a new rapid method: cleavage fragment length polymorphism analysis (CFLPA). Mol Cell Probes, 11, 155-60.

Saiki, R. K., Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R., Horn, G. T., Mullis, K. B., & Erlich, H. A. (1988). Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 239, 487-91.

Schachter, J., Hook, E. W., 3rd, McCormack, W. M., Quinn, T. C., Chernesky, M., Chong, S., Girdner, J. I., Dixon, P. B., DeMeo, L., Williams, E., Cullen, A., & Lorincz, A. (1999). Ability of the digene hybrid capture II test to identify Chlamydia trachomatis and Neisseria gonorrhoeae in cervical specimens. J Clin Microbiol, 37, 3668-71.

Schiffman, M. H., Kiviat, N. B., Burk, R. D., Shah, K. V., Daniel, R. W., Lewis, R., Kuypers, J., Manos, M. M., Scott, D. R., & Sherman, M. E. (1995). Accuracy and interlaboratory reliability of human papillomavirus DNA testing by hybrid capture. J Clin Microbiol, 33, 545-50.

Spears, P. A., Linn, C. P., Woodard, D. L., & Walker, G. T. (1997). Simultaneous strand displacement amplification and fluorescence polarization detection of Chlamydia trachomatis DNA. Anal Biochem, 247, 130-7.

Sreevatsan, S., Bookout, J. B., Ringpis, F. M., Pottathil, M. R., Marshall, D. J., De Arruda, M., Murvine, C., Fors, L., Pottathil, R. M., & Barathur, R. R. (1998). Algorithmic approach to high-throughput molecular screening for alpha interferon-resistant genotypes in hepatitis C patients. J Clin Microbiol, 36, 1895-901.

Tang, Y. W., & Persing, D. H. (1999). Molecular detection and identification of microorganisms. In: Murray, P. R., Jo Baron, E., Pfaller, M. A., Tenover, F. C., & Yolken, R. H. eds. Manual of Clinical Microbiology, 7th ed. American Society for Microbiology, Washington, DC, pp. 215-244.

Tang, Y. W., Procop, G. W., & Persing, D. H. (1997). Molecular diagnostics of infectious diseases. Clin Chem, 43, 2021-38.

Urdea, M. S., Horn, T., Fultz, T. J., Anderson, M., Running, J. A., Hamren, S., Ahle, D., & Chang, C. A. (1991). Branched DNA amplification multimers for the sensitive, direct detection of human hepatitis viruses. Nuc Acids Symp Ser, 197-200.

Walker, G. T., Fraiser, M. S., Schram, J. L., Little, M. C., Nadeau, J. G., & Malinowski, D. P. (1992). Strand displacement amplification—an isothermal, in vitro DNA amplification technique. Nucleic Acids Res, 20, 1691-6.

Wu, D. Y., & Wallace, R. B. (1989). The ligation amplification reaction (LAR)— amplification of specific DNA sequences using sequential rounds of template-dependent ligation. Genomics, 4, 560-9.

Yolken, R. H. (2002). Nucleic acid amplification assays for microbial diagnosis: challenges and opportunities. J Pediatr, 140, 290-2.

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